Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 148793..149343 | Replicon | plasmid p3796A |
Accession | NZ_OX638565 | ||
Organism | Pseudomonas aeruginosa strain 3796A isolate 3796A |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | QRQ54_RS33465 | Protein ID | WP_034061810.1 |
Coordinates | 149065..149343 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | QRQ54_RS33460 | Protein ID | WP_034061812.1 |
Coordinates | 148793..149065 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QRQ54_RS33430 (PAE3796A_33250) | 144104..144769 | + | 666 | WP_034061819.1 | hypothetical protein | - |
QRQ54_RS33435 (PAE3796A_33255) | 144907..145173 | + | 267 | WP_034061816.1 | helix-turn-helix transcriptional regulator | - |
QRQ54_RS33440 (PAE3796A_33260) | 145139..145951 | + | 813 | Protein_181 | site-specific integrase | - |
QRQ54_RS33445 (PAE3796A_33265) | 146113..147261 | + | 1149 | WP_034061814.1 | site-specific integrase | - |
QRQ54_RS33450 (PAE3796A_33270) | 147403..148149 | + | 747 | WP_034061813.1 | DUF2807 domain-containing protein | - |
QRQ54_RS33455 | 148159..148599 | + | 441 | WP_128734628.1 | hypothetical protein | - |
QRQ54_RS33460 (PAE3796A_33275) | 148793..149065 | + | 273 | WP_034061812.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
QRQ54_RS33465 (PAE3796A_33280) | 149065..149343 | + | 279 | WP_034061810.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
QRQ54_RS33470 (PAE3796A_33285) | 149345..150172 | + | 828 | WP_034061809.1 | hypothetical protein | - |
QRQ54_RS33475 (PAE3796A_33290) | 150186..150428 | + | 243 | WP_034061808.1 | hypothetical protein | - |
QRQ54_RS33480 | 150441..150953 | - | 513 | WP_044305333.1 | hypothetical protein | - |
QRQ54_RS33485 (PAE3796A_33295) | 150950..152800 | - | 1851 | WP_049267175.1 | tyrosine-type recombinase/integrase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..178483 | 178483 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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