Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182088..2182356 | Replicon | chromosome |
| Accession | NZ_OX637964 | ||
| Organism | Escherichia coli O25b:H4-ST131 isolate 46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182216..2182318 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182088..2182356 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQG90_RS10685 | 2178641..2179303 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQG90_RS10690 | 2179327..2179983 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQG90_RS10695 | 2180085..2180315 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQG90_RS10700 | 2180454..2180828 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQG90_RS10705 | 2180832..2181704 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QQG90_RS10710 | 2181717..2182058 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2182088..2182356 | - | 269 | - | - | Antitoxin |
| - | 2182216..2182318 | + | 103 | - | - | Toxin |
| QQG90_RS10715 | 2182453..2183109 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QQG90_RS10720 | 2183110..2183301 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQG90_RS10725 | 2183406..2183642 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQG90_RS10730 | 2183759..2185198 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2099726..2198195 | 98469 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T297146 NZ_OX637964:2182216-2182318 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT297146 NZ_OX637964:c2182356-2182088 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
