Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2129804..2130072 | Replicon | chromosome |
| Accession | NZ_OX637961 | ||
| Organism | Escherichia coli O25b:H4-ST131 isolate 86 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2129932..2130034 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2129804..2130072 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQG89_RS10170 | 2126357..2127019 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQG89_RS10175 | 2127043..2127699 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQG89_RS10180 | 2127801..2128031 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQG89_RS10185 | 2128170..2128544 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQG89_RS10190 | 2128548..2129420 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| QQG89_RS10195 | 2129433..2129774 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2129804..2130072 | - | 269 | - | - | Antitoxin |
| - | 2129932..2130034 | + | 103 | - | - | Toxin |
| QQG89_RS10200 | 2130169..2130825 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| QQG89_RS10205 | 2130826..2131017 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQG89_RS10210 | 2131122..2131358 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQG89_RS10215 | 2131475..2132914 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T297116 NZ_OX637961:2129932-2130034 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT297116 NZ_OX637961:c2130072-2129804 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
