297072

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 3698747..3699416 Replicon chromosome
Accession NZ_OX461117
Organism Shewanella baltica strain SF1039 isolate SF1039

Toxin (Protein)


Gene name ygfX Uniprot ID -
Locus tag QOT06_RS15750 Protein ID WP_283629749.1
Coordinates 3698747..3699187 (-) Length 147 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID -
Locus tag QOT06_RS15755 Protein ID WP_006080770.1
Coordinates 3699168..3699416 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QOT06_RS15725 3694223..3694696 - 474 WP_006080776.1 SoxR reducing system RseC family protein -
QOT06_RS15730 3694707..3695639 - 933 WP_283629747.1 MucB/RseB C-terminal domain-containing protein -
QOT06_RS15735 3695652..3696278 - 627 WP_006080774.1 RseA family anti-sigma factor -
QOT06_RS15740 3696320..3696898 - 579 WP_006080773.1 RNA polymerase sigma factor RpoE -
QOT06_RS15745 3697089..3698702 + 1614 WP_283629748.1 L-aspartate oxidase -
QOT06_RS15750 3698747..3699187 - 441 WP_283629749.1 hypothetical protein Toxin
QOT06_RS15755 3699168..3699416 - 249 WP_006080770.1 succinate dehydrogenase assembly factor 2 Antitoxin
QOT06_RS15760 3699502..3700410 - 909 WP_283629750.1 transcriptional activator NhaR -
QOT06_RS15765 3700484..3700870 - 387 WP_006080768.1 hypothetical protein -
QOT06_RS15770 3700873..3702042 - 1170 WP_006080767.1 Na+/H+ antiporter NhaA -
QOT06_RS15775 3702160..3702954 - 795 WP_011846161.1 thymidylate synthase -
QOT06_RS15780 3702951..3703760 - 810 WP_283629751.1 prolipoprotein diacylglyceryl transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(6-135)

Antitoxin

Flavinator of succinate dehydrogenase

(7-77)


Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 17284.29 Da        Isoelectric Point: 7.7168

>T297072 WP_283629749.1 NZ_OX461117:c3699187-3698747 [Shewanella baltica]
VEDRHHSFSVKASFDQRLSLVVFICVCSSSFLLWPQSDNLALSLLKYLFIALVCIFLLSQLWRLQHWRLDFVLSDKGEGR
LSTGEHFQVLRRTWVTPFVCLMYIEVDTQLRLLMVWADMLDDTDYRHLCRLLLRAKIQQTKPHTEI

Download         Length: 441 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9723.36 Da        Isoelectric Point: 4.4929

>AT297072 WP_006080770.1 NZ_OX461117:c3699416-3699168 [Shewanella baltica]
MELMNIARVRWACRRGMLELDVLFQPFVENFYQEMSDEDKTVFIRLLECEDPELFAWFMGHEVCPDAELARMVVKVRGRP
AP

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References