Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 4520676..4521154 Replicon chromosome
Accession NZ_OX461105
Organism Serratia proteamaculans strain EBP3064 isolate EBP3064

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QOT07_RS21025 Protein ID WP_283603858.1
Coordinates 4520676..4520963 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QOT07_RS21030 Protein ID WP_219016928.1
Coordinates 4520963..4521154 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QOT07_RS21000 4515904..4517184 - 1281 WP_099065286.1 polysaccharide deacetylase family protein -
QOT07_RS21005 4517406..4518176 - 771 WP_099065287.1 ABC transporter permease -
QOT07_RS21010 4518173..4519096 - 924 WP_085118881.1 ABC transporter ATP-binding protein -
QOT07_RS21015 4519333..4519989 + 657 WP_061807929.1 carbonate dehydratase -
QOT07_RS21020 4520027..4520563 - 537 WP_012146700.1 hypoxanthine phosphoribosyltransferase -
QOT07_RS21025 4520676..4520963 - 288 WP_283603858.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QOT07_RS21030 4520963..4521154 - 192 WP_219016928.1 stability determinant Antitoxin
QOT07_RS21035 4521261..4522880 - 1620 WP_283603859.1 multicopper oxidase CueO -
QOT07_RS21040 4523117..4523464 + 348 WP_099065294.1 YacC family pilotin-like protein -
QOT07_RS21045 4523574..4524437 + 864 WP_099065295.1 polyamine aminopropyltransferase -
QOT07_RS21050 4524465..4525259 + 795 WP_099065289.1 adenosylmethionine decarboxylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 4520676..4529586 8910


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10870.62 Da        Isoelectric Point: 6.4811

>T297067 WP_283603858.1 NZ_OX461105:c4520963-4520676 [Serratia proteamaculans]
MLAVKWTDEAKTGLYTLIAFIAEQNPVAAESLMQRIEESVIPVTEHPYLFRTGRVAGTREIVVHPNYIVIYRVLAEHIEV
LSVLHARQEYPRTLP

Download         Length: 288 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7148.05 Da        Isoelectric Point: 5.8086

>AT297067 WP_219016928.1 NZ_OX461105:c4521154-4520963 [Serratia proteamaculans]
MSTKLDPIVSEFETQEQADRYDRWFRSQVEAAINSSAPLIPHDEVMAGARKIIEEAKAKRKSA

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References