Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3987870..3988337 Replicon chromosome
Accession NZ_OX461105
Organism Serratia proteamaculans strain EBP3064 isolate EBP3064

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QOT07_RS18600 Protein ID WP_283603720.1
Coordinates 3987870..3988139 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QOT07_RS18605 Protein ID WP_099062595.1
Coordinates 3988143..3988337 (-) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QOT07_RS18570 3983064..3983579 + 516 WP_129936911.1 E3 ubiquitin--protein ligase -
QOT07_RS18575 3983610..3983858 + 249 WP_006316897.1 GlsB/YeaQ/YmgE family stress response membrane protein -
QOT07_RS18580 3983911..3985200 - 1290 WP_112348682.1 uracil permease -
QOT07_RS18585 3985262..3985888 - 627 WP_017893631.1 uracil phosphoribosyltransferase -
QOT07_RS18590 3986144..3987181 + 1038 WP_085118131.1 phosphoribosylformylglycinamidine cyclo-ligase -
QOT07_RS18595 3987181..3987819 + 639 WP_283603719.1 phosphoribosylglycinamide formyltransferase -
QOT07_RS18600 3987870..3988139 - 270 WP_283603720.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QOT07_RS18605 3988143..3988337 - 195 WP_099062595.1 hypothetical protein Antitoxin
QOT07_RS18610 3988484..3989038 + 555 WP_099062596.1 spermidine N1-acetyltransferase -
QOT07_RS18615 3989117..3989929 - 813 WP_085118133.1 phosphate ABC transporter ATP-binding protein PstB -
QOT07_RS18620 3989958..3991610 - 1653 WP_283603721.1 phosphate ABC transporter permease PstA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10522.14 Da        Isoelectric Point: 6.6437

>T297063 WP_283603720.1 NZ_OX461105:c3988139-3987870 [Serratia proteamaculans]
MRIEWSSEAQEELWSIIDYIDDRNPQAARKLHREIEAVVLTLPLNPLMHRLGRVDNTREIVVHPNYLVVYRVIGHIEVLS
VIHAKREYP

Download         Length: 270 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7317.49 Da        Isoelectric Point: 10.3798

>AT297063 WP_099062595.1 NZ_OX461105:c3988337-3988143 [Serratia proteamaculans]
MAIKPPLSTLPVLGSAEQTESYDRWYRAKVESAINSEQPRISHEQVMTEMQTRLAAKKKLRKMG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References