Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2110456..2110574 | Replicon | chromosome |
| Accession | NZ_OX461105 | ||
| Organism | Serratia proteamaculans strain EBP3064 isolate EBP3064 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2110478..2110574 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2110456..2110574 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOT07_RS09930 | 2105632..2106057 | + | 426 | WP_099062466.1 | TraR/DksA C4-type zinc finger protein | - |
| QOT07_RS09935 | 2106230..2107183 | + | 954 | WP_261284255.1 | prolyl aminopeptidase | - |
| QOT07_RS09940 | 2107214..2107444 | - | 231 | WP_085116270.1 | DNA polymerase III subunit theta | - |
| QOT07_RS09945 | 2107817..2108335 | + | 519 | WP_099062464.1 | non-heme ferritin | - |
| QOT07_RS09950 | 2108657..2109040 | + | 384 | WP_012006367.1 | CopC domain-containing protein YobA | - |
| QOT07_RS09955 | 2109044..2109925 | + | 882 | WP_283603018.1 | copper homeostasis membrane protein CopD | - |
| QOT07_RS09960 | 2109995..2110336 | + | 342 | WP_283603019.1 | YebY family protein | - |
| - | 2110456..2110574 | - | 119 | - | - | Antitoxin |
| - | 2110478..2110574 | + | 97 | - | - | Toxin |
| QOT07_RS09965 | 2110813..2112357 | - | 1545 | WP_283603020.1 | CDP-glycerol glycerophosphotransferase family protein | - |
| QOT07_RS09970 | 2112701..2113237 | - | 537 | WP_283603021.1 | DUF4136 domain-containing protein | - |
| QOT07_RS09975 | 2113680..2114030 | + | 351 | WP_099062394.1 | DUF4377 domain-containing protein | - |
| QOT07_RS09980 | 2114249..2115448 | + | 1200 | WP_085116277.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T297058 NZ_OX461105:2110478-2110574 [Serratia proteamaculans]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT297058 NZ_OX461105:c2110574-2110456 [Serratia proteamaculans]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
