Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 467613..468187 Replicon chromosome
Accession NZ_OX461105
Organism Serratia proteamaculans strain EBP3064 isolate EBP3064

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QOT07_RS02165 Protein ID WP_283602484.1
Coordinates 467909..468187 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QOT07_RS02160 Protein ID WP_085119515.1
Coordinates 467613..467900 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QOT07_RS02135 463374..464459 - 1086 WP_261285470.1 carbon-phosphorus lyase complex subunit PhnI -
QOT07_RS02140 464459..465040 - 582 WP_283602482.1 phosphonate C-P lyase system protein PhnH -
QOT07_RS02145 465044..465487 - 444 WP_099064523.1 phosphonate C-P lyase system protein PhnG -
QOT07_RS02150 465488..466213 - 726 WP_283604269.1 phosphonate metabolism transcriptional regulator PhnF -
QOT07_RS02155 466450..467508 + 1059 WP_283602483.1 permease -
QOT07_RS02160 467613..467900 + 288 WP_085119515.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
QOT07_RS02165 467909..468187 + 279 WP_283602484.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QOT07_RS02170 468190..468654 - 465 WP_283602485.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
QOT07_RS02175 468715..470853 - 2139 WP_207978075.1 anaerobic ribonucleoside-triphosphate reductase -
QOT07_RS02180 471126..472034 - 909 WP_262261554.1 LysR family transcriptional regulator -
QOT07_RS02185 472139..472663 + 525 WP_283602486.1 NAD(P)H-dependent oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-44)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10690.35 Da        Isoelectric Point: 4.6437

>T297054 WP_283602484.1 NZ_OX461105:467909-468187 [Serratia proteamaculans]
MRVEWDDEALLDRERIFDFLYPFNPQAAEQADSEIDKAVKRLLDYPELGKIWYGQARKLLISQASLLVLYVVVGDVIKVL
AVAHQREKFPDL

Download         Length: 279 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10988.32 Da        Isoelectric Point: 5.7917

>AT297054 WP_085119515.1 NZ_OX461105:467613-467900 [Serratia proteamaculans]
MESRIQFRIEDETKRLAQKAAEAKGITLSEACRRLAEQMADEQRAAEQHENWLKEKVDAAFSRLHEGSAVYLSQEQVEES
MDAFKAKVRAKYDQK

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References