Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 467613..468187 Replicon chromosome
Accession NZ_OX461105
Organism Serratia proteamaculans strain EBP3064 isolate EBP3064

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QOT07_RS02165 Protein ID WP_283602484.1
Coordinates 467909..468187 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QOT07_RS02160 Protein ID WP_085119515.1
Coordinates 467613..467900 (+) Length 96 a.a.

Genomic Context

QOT07_RS02155QOT07_RS02160QOT07_RS02165QOT07_RS02185QOT07_RS02135QOT07_RS02140QOT07_RS02145QOT07_RS02150QOT07_RS02170QOT07_RS02175QOT07_RS02180
Location: 466450..467508 (1059 bp)
Type: Others
Protein ID: WP_283602483.1
Location: 467613..467900 (288 bp)
Type: Antitoxin
Protein ID: WP_085119515.1
Location: 467909..468187 (279 bp)
Type: Toxin
Protein ID: WP_283602484.1
Location: 472139..472663 (525 bp)
Type: Others
Protein ID: WP_283602486.1
Location: 463374..464459 (1086 bp)
Type: Others
Protein ID: WP_261285470.1
Location: 464459..465040 (582 bp)
Type: Others
Protein ID: WP_283602482.1
Location: 465044..465487 (444 bp)
Type: Others
Protein ID: WP_099064523.1
Location: 465488..466213 (726 bp)
Type: Others
Protein ID: WP_283604269.1
Location: 468190..468654 (465 bp)
Type: Others
Protein ID: WP_283602485.1
Location: 468715..470853 (2139 bp)
Type: Others
Protein ID: WP_207978075.1
Location: 471126..472034 (909 bp)
Type: Others
Protein ID: WP_262261554.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QOT07_RS02135463374..464459-1086WP_261285470.1carbon-phosphorus lyase complex subunit PhnI-
QOT07_RS02140464459..465040-582WP_283602482.1phosphonate C-P lyase system protein PhnH-
QOT07_RS02145465044..465487-444WP_099064523.1phosphonate C-P lyase system protein PhnG-
QOT07_RS02150465488..466213-726WP_283604269.1phosphonate metabolism transcriptional regulator PhnF-
QOT07_RS02155466450..467508+1059WP_283602483.1permease-
QOT07_RS02160467613..467900+288WP_085119515.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
QOT07_RS02165467909..468187+279WP_283602484.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QOT07_RS02170468190..468654-465WP_283602485.1anaerobic ribonucleoside-triphosphate reductase-activating protein-
QOT07_RS02175468715..470853-2139WP_207978075.1anaerobic ribonucleoside-triphosphate reductase-
QOT07_RS02180471126..472034-909WP_262261554.1LysR family transcriptional regulator-
QOT07_RS02185472139..472663+525WP_283602486.1NAD(P)H-dependent oxidoreductase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-44)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10690.35 Da        Isoelectric Point: 4.6437

>T297054 WP_283602484.1 NZ_OX461105:467909-468187 [Serratia proteamaculans]
MRVEWDDEALLDRERIFDFLYPFNPQAAEQADSEIDKAVKRLLDYPELGKIWYGQARKLLISQASLLVLYVVVGDVIKVL
AVAHQREKFPDL

Download         Length: 279 bp

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10988.32 Da        Isoelectric Point: 5.7917

>AT297054 WP_085119515.1 NZ_OX461105:467613-467900 [Serratia proteamaculans]
MESRIQFRIEDETKRLAQKAAEAKGITLSEACRRLAEQMADEQRAAEQHENWLKEKVDAAFSRLHEGSAVYLSQEQVEES
MDAFKAKVRAKYDQK

Download         Length: 288 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References