Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/ParE-RHH |
Location | 1491..2010 | Replicon | plasmid MIP2461_p2 |
Accession | NZ_OX460965 | ||
Organism | Hafnia paralvei strain MIP2461 isolate MIP2461 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A837F4A9 |
Locus tag | QOT00_RS22765 | Protein ID | WP_000277490.1 |
Coordinates | 1726..2010 (+) | Length | 95 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A6P1V8C3 |
Locus tag | QOT00_RS22760 | Protein ID | WP_000124732.1 |
Coordinates | 1491..1733 (+) | Length | 81 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QOT00_RS22755 | 1..918 | + | 918 | WP_064645521.1 | plasmid replication initiator RepA | - |
QOT00_RS22760 | 1491..1733 | + | 243 | WP_000124732.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
QOT00_RS22765 | 1726..2010 | + | 285 | WP_000277490.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
QOT00_RS22770 | 2344..2712 | + | 369 | WP_032677090.1 | hypothetical protein | - |
QOT00_RS22775 | 2861..3028 | - | 168 | WP_179289137.1 | hypothetical protein | - |
QOT00_RS22780 | 2948..3370 | + | 423 | Protein_5 | phosphodiesterase MrkJ | - |
QOT00_RS22785 | 3405..4040 | - | 636 | WP_000677445.1 | type 3 fimbria minor subunit MrkF | - |
QOT00_RS22790 | 4054..5049 | - | 996 | WP_050296622.1 | type 3 fimbria adhesin subunit MrkD | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | mrkJ / mrkF / mrkD / mrkC / mrkB / mrkA | 1..39765 | 39765 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A837F4A9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A6P1V8C3 |