297029

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2541798..2541941 Replicon chromosome
Accession NZ_OX460963
Organism Hafnia paralvei strain MIP2461 isolate MIP2461

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2541836..2541939 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2541798..2541941 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QOT00_RS12030 2537585..2538829 + 1245 WP_008813592.1 membrane integrity lipid transport subunit YebS -
QOT00_RS12035 2538798..2541428 + 2631 WP_096080800.1 PqiB family protein -
- 2541798..2541941 - 144 - - Antitoxin
- 2541836..2541939 + 104 - - Toxin
QOT00_RS12040 2542347..2542895 + 549 WP_008813595.1 GNAT family N-acetyltransferase -
QOT00_RS12045 2542919..2543560 + 642 WP_130975852.1 Vat family streptogramin A O-acetyltransferase -
QOT00_RS12050 2543774..2544706 - 933 WP_130961186.1 Dyp-type peroxidase -
QOT00_RS12055 2545336..2546484 + 1149 WP_174705398.1 autotransporter domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T297029 NZ_OX460963:2541836-2541939 [Hafnia paralvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCTGATAC
AGGAGTCGTATCAGGTCTTTTTTT

Antitoxin


Download         Length: 144 bp

>AT297029 NZ_OX460963:c2541941-2541798 [Hafnia paralvei]
ATAAAAAAAGACCTGATACGACTCCTGTATCAGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTGGATTGCCTTGCTATTTAATAGTAGTCGACGATGCTTTTTTTTCCAGTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References