296981

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 87775..88389 Replicon chromosome
Accession NZ_OX458335
Organism Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215

Toxin (Protein)


Gene name PfiT Uniprot ID Q88AZ2
Locus tag QWJ11_RS00455 Protein ID WP_005768484.1
Coordinates 88039..88389 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID Q88AZ3
Locus tag QWJ11_RS00450 Protein ID WP_007246542.1
Coordinates 87775..88026 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QWJ11_RS00425 (DAPPPG215_00415) 82841..83284 - 444 WP_172679536.1 ATP-dependent zinc protease -
QWJ11_RS00430 (DAPPPG215_00420) 83334..84116 - 783 WP_010206181.1 EAL domain-containing protein -
QWJ11_RS00435 (DAPPPG215_00425) 84284..84691 + 408 WP_007246541.1 S4 domain-containing protein -
QWJ11_RS00440 (DAPPPG215_00430) 84852..85754 + 903 WP_005613652.1 Hsp33 family molecular chaperone HslO -
QWJ11_RS00445 (DAPPPG215_00435) 85933..87477 + 1545 WP_005613653.1 phosphoenolpyruvate carboxykinase -
QWJ11_RS00450 (DAPPPG215_00440) 87775..88026 + 252 WP_007246542.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QWJ11_RS00455 (DAPPPG215_00445) 88039..88389 + 351 WP_005768484.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QWJ11_RS00460 (DAPPPG215_00450) 88691..89143 - 453 WP_007246543.1 hypothetical protein -
QWJ11_RS00465 (DAPPPG215_00460) 89534..90148 - 615 WP_010206280.1 hypothetical protein -
QWJ11_RS00470 (DAPPPG215_00465) 90245..90952 - 708 WP_059296115.1 hypothetical protein -
QWJ11_RS00475 91228..91578 + 351 Protein_94 phosphoenolpyruvate carboxykinase (ATP) -
QWJ11_RS00480 (DAPPPG215_00475) 91618..92385 - 768 WP_007247647.1 hypothetical protein -
QWJ11_RS00485 (DAPPPG215_00480) 92382..93191 - 810 WP_007247648.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-101)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 13110.05 Da        Isoelectric Point: 4.3176

>T296981 WP_005768484.1 NZ_OX458335:88039-88389 [Pseudomonas syringae pv. tomato]
MNMFALRFTDVAQQSLEDQVEHLAVYQGFSPAAQRIDTLIDAIQDKLLSTPLGYPVSPQLSELGVLHYRELNADGYRIFY
EVRETDDINVIVIVLVLGGKQSVEQALIRYCLLQPI

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9474.83 Da        Isoelectric Point: 9.5019

>AT296981 WP_007246542.1 NZ_OX458335:87775-88026 [Pseudomonas syringae pv. tomato]
MRVETISYLKRNAADLPLDEPLIVTQNGVPAYVVESYADRKRRDESIALVKLLAISSREYSQGKHCSADELKARLSRRFA
HKE

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q88AZ2

Antitoxin

Source ID Structure
AlphaFold DB Q88AZ3

References