Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 300423..300568 | Replicon | chromosome |
| Accession | NZ_OX359182 | ||
| Organism | Klebsiella pneumoniae strain KP34 isolate 2018-347802-001-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 300430..300532 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 300423..300568 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OM989_RS01450 | 295955..297388 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OM989_RS01455 | 297504..297743 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OM989_RS01460 | 297841..298032 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OM989_RS01465 | 298029..298682 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| OM989_RS01470 | 298839..299807 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OM989_RS01475 | 299912..300055 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 300423..300568 | + | 146 | - | - | Antitoxin |
| - | 300430..300532 | - | 103 | - | - | Toxin |
| OM989_RS01480 | 300691..301029 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OM989_RS01485 | 301046..301915 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| OM989_RS01490 | 301919..302293 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OM989_RS01495 | 302406..302636 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OM989_RS01500 | 302715..303374 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| OM989_RS01505 | 303378..305438 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T296710 NZ_OX359182:c300532-300430 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT296710 NZ_OX359182:300423-300568 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
