Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4197086..4197602 Replicon chromosome
Accession NZ_OX352322
Organism Pseudomonas sp. MM223

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ONI07_RS19365 Protein ID WP_264359765.1
Coordinates 4197086..4197367 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag ONI07_RS19370 Protein ID WP_264359766.1
Coordinates 4197357..4197602 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ONI07_RS19350 (DBADOPDK_03951) 4193421..4194662 - 1242 WP_264359763.1 Zn-dependent hydrolase -
ONI07_RS19355 4194693..4195999 - 1307 Protein_3803 MHS family MFS transporter -
ONI07_RS19360 (DBADOPDK_03954) 4196181..4197089 + 909 WP_264387067.1 LysR family transcriptional regulator -
ONI07_RS19365 (DBADOPDK_03955) 4197086..4197367 - 282 WP_264359765.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ONI07_RS19370 (DBADOPDK_03956) 4197357..4197602 - 246 WP_264359766.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ONI07_RS19375 (DBADOPDK_03957) 4197822..4198619 + 798 WP_264359767.1 SDR family oxidoreductase -
ONI07_RS19380 (DBADOPDK_03958) 4198641..4199048 + 408 WP_264359768.1 SRPBCC family protein -
ONI07_RS19385 (DBADOPDK_03959) 4199168..4200154 + 987 WP_264359769.1 zinc-binding dehydrogenase -
ONI07_RS19390 (DBADOPDK_03960) 4200262..4200804 + 543 WP_264387068.1 WYL domain-containing protein -
ONI07_RS19395 (DBADOPDK_03961) 4200902..4201837 + 936 WP_264359770.1 cyclase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-76)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10853.72 Da        Isoelectric Point: 10.7594

>T296628 WP_264359765.1 NZ_OX352322:c4197367-4197086 [Pseudomonas sp. MM223]
MTYKLEFLPSALKEWGKLGHTVREQIKKKLGERLQSPKVQADALRDLANHYKIKLKASGYRLVYRVEDERIVVVVVSVGK
RERSEVYRAAQKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8763.21 Da        Isoelectric Point: 4.3611

>AT296628 WP_264359766.1 NZ_OX352322:c4197602-4197357 [Pseudomonas sp. MM223]
MQNIFADVAVSVSELKKNPSAVMTGAAGMPVAVLNHNRVMGYMVPAELYEAMMERLEDLELSELAKARLGEKGVPVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References