Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1115630..1115901 | Replicon | chromosome |
| Accession | NZ_OX030728 | ||
| Organism | Escherichia coli isolate 68 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1115668..1115771 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1115630..1115901 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ200_RS05630 | 1112788..1114226 | + | 1439 | Protein_1117 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ200_RS05635 | 1114344..1114580 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LQ200_RS05640 | 1114685..1114876 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LQ200_RS05645 | 1114877..1115533 | - | 657 | WP_000812713.1 | protein-serine/threonine phosphatase | - |
| - | 1115630..1115901 | + | 272 | - | - | Antitoxin |
| - | 1115668..1115771 | - | 104 | - | - | Toxin |
| LQ200_RS05650 | 1115929..1116270 | - | 342 | WP_000976490.1 | YebY family protein | - |
| LQ200_RS05655 | 1116283..1117155 | - | 873 | WP_000879329.1 | copper homeostasis membrane protein CopD | - |
| LQ200_RS05660 | 1117159..1117533 | - | 375 | WP_000168749.1 | CopC domain-containing protein YobA | - |
| LQ200_RS05665 | 1117672..1117902 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ200_RS05670 | 1118004..1118660 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ200_RS05675 | 1118684..1119346 | + | 663 | WP_000944239.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1112782..1140396 | 27614 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296543 NZ_OX030728:c1115771-1115668 [Escherichia coli]
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCATCTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT296543 NZ_OX030728:1115630-1115901 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGATGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
