Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 1497593..1498236 Replicon chromosome
Accession NZ_OW970436
Organism Klebsiella pneumoniae isolate 147

Toxin (Protein)


Gene name vagD Uniprot ID A0A4S8C081
Locus tag LQV41_RS07440 Protein ID WP_032433387.1
Coordinates 1497820..1498236 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID Q84A07
Locus tag LQV41_RS07435 Protein ID WP_001261276.1
Coordinates 1497593..1497823 (+) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQV41_RS07420 (1492615) 1492615..1493702 + 1088 Protein_1452 transcriptional repressor PifC -
LQV41_RS07425 (1493705) 1493705..1495945 + 2241 WP_045326788.1 P-loop NTPase fold protein -
LQV41_RS07430 (1496473) 1496473..1497288 - 816 WP_032433388.1 hypothetical protein -
LQV41_RS07435 (1497593) 1497593..1497823 + 231 WP_001261276.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
LQV41_RS07440 (1497820) 1497820..1498236 + 417 WP_032433387.1 type II toxin-antitoxin system VapC family toxin Toxin
LQV41_RS07445 (1498392) 1498392..1499372 + 981 WP_032433385.1 hypothetical protein -
LQV41_RS07450 (1499567) 1499567..1501138 - 1572 WP_032433383.1 AAA family ATPase -
LQV41_RS07455 (1501457) 1501457..1501705 + 249 WP_032433382.1 hypothetical protein -
LQV41_RS07460 (1501764) 1501764..1502282 + 519 WP_045326794.1 hypothetical protein -
LQV41_RS07465 (1502313) 1502313..1502804 + 492 WP_032433378.1 hypothetical protein -
LQV41_RS07470 (1502864) 1502864..1503067 + 204 WP_032433376.1 HHA domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 1484507..1528095 43588


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(6-129)

Antitoxin

SpoVT-AbrB domain

(7-47)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14974.43 Da        Isoelectric Point: 7.8921

>T296323 WP_032433387.1 NZ_OW970436:1497820-1498236 [Klebsiella pneumoniae]
MKKTWMLDTNICSFIMREQPAAVLKRLEQAVLRGDRIVVSAVTYAEMRFGATGPKASPRHIQLVDAFCARLDAILPWDRA
AVDATTDIRVALHLAGTPIGPNDTAIAGHAIAAGAVLVTNNVREFARVPGLTLEDWVI

Download         Length: 417 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8721.74 Da        Isoelectric Point: 4.3533

>AT296323 WP_001261276.1 NZ_OW970436:1497593-1497823 [Klebsiella pneumoniae]
MRTVSIFKNGNNRAIRLPRDLDFDGVSELEIVREGDSIILRPVRPTWGSFAQLDRADPDFMAEREDVVSDEGRFEP

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4S8C081

Antitoxin

Source ID Structure
AlphaFold DB A0A387K023

References