Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2069207..2069352 | Replicon | chromosome |
| Accession | NZ_OW970374 | ||
| Organism | Klebsiella pneumoniae isolate 101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2069243..2069345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2069207..2069352 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQV21_RS10145 | 2064337..2066397 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LQV21_RS10150 | 2066401..2067060 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LQV21_RS10155 | 2067139..2067369 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LQV21_RS10160 | 2067482..2067856 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LQV21_RS10165 | 2067860..2068729 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| LQV21_RS10170 | 2068746..2069084 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2069207..2069352 | - | 146 | - | - | Antitoxin |
| - | 2069243..2069345 | + | 103 | - | - | Toxin |
| LQV21_RS10175 | 2069720..2069863 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LQV21_RS10180 | 2069968..2070936 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LQV21_RS10185 | 2071093..2071746 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| LQV21_RS10190 | 2071743..2071934 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LQV21_RS10195 | 2072032..2072271 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LQV21_RS10200 | 2072387..2073820 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T296275 NZ_OW970374:2069243-2069345 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT296275 NZ_OW970374:c2069352-2069207 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
