Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 72541..73076 Replicon plasmid P3
Accession NZ_OW970318
Organism Pantoea agglomerans strain DAPP-PG734

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OOS96_RS24415 Protein ID WP_031593844.1
Coordinates 72789..73076 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A8X8J020
Locus tag OOS96_RS24410 Protein ID WP_031593843.1
Coordinates 72541..72792 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OOS96_RS24390 (DAPPPG734_24730) 68144..68413 - 270 WP_010257103.1 DUF1471 family periplasmic protein YahO -
OOS96_RS24395 (DAPPPG734_24735) 68690..69826 - 1137 WP_031593840.1 HlyD family secretion protein -
OOS96_RS24400 (DAPPPG734_24740) 69828..70154 - 327 WP_031593841.1 DUF3302 domain-containing protein -
OOS96_RS24405 (DAPPPG734_24745) 70748..72400 + 1653 WP_031593842.1 intermembrane transport protein PqiB -
OOS96_RS24410 (DAPPPG734_24750) 72541..72792 + 252 WP_031593843.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OOS96_RS24415 (DAPPPG734_24755) 72789..73076 + 288 WP_031593844.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OOS96_RS24420 (DAPPPG734_24765) 73438..73752 + 315 WP_031593845.1 hypothetical protein -
OOS96_RS24425 (DAPPPG734_24770) 73749..74567 - 819 WP_031593846.1 DUF4225 domain-containing protein -
OOS96_RS24430 (DAPPPG734_24775) 74903..75598 + 696 WP_031593847.1 haloacid dehalogenase type II -
OOS96_RS24435 (DAPPPG734_24780) 75636..77165 - 1530 WP_031593848.1 Fic family protein -
OOS96_RS24440 (DAPPPG734_24785) 77312..77677 - 366 WP_031593849.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF -
OOS96_RS24445 (DAPPPG734_24790) 77674..77994 - 321 WP_010257131.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - - 1..163706 163706


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11127.07 Da        Isoelectric Point: 10.3404

>T296238 WP_031593844.1 NZ_OW970318:72789-73076 [Pantoea agglomerans]
VSCTVKFREEAFKEWQKLDKSLQQQFAKKLKKCCDNPHIPSARLRGIKDCYKIKLRASGFRLVYQVIDDQLVIAVVAVGK
RERSDIYHLASERMR

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9135.40 Da        Isoelectric Point: 3.9507

>AT296238 WP_031593843.1 NZ_OW970318:72541-72792 [Pantoea agglomerans]
MPNIILSDTSASVSELKKNPMATVNAGDGYPVAILNRNQPAFYCVPAELYEQMLDALDDQELVKLVNERSGQRLLDVDLD
ALL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References