Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 31328..31854 Replicon plasmid P3
Accession NZ_OW970318
Organism Pantoea agglomerans strain DAPP-PG734

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OOS96_RS24210 Protein ID WP_031593074.1
Coordinates 31328..31615 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OOS96_RS24215 Protein ID WP_031593072.1
Coordinates 31615..31854 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OOS96_RS24185 (DAPPPG734_24525) 27228..28253 - 1026 WP_031593079.1 alpha/beta hydrolase -
OOS96_RS24190 (DAPPPG734_24530) 28322..29446 - 1125 WP_080707923.1 MFS transporter -
OOS96_RS24195 (DAPPPG734_24535) 29649..30548 + 900 WP_031593077.1 LysR family transcriptional regulator -
OOS96_RS24200 (DAPPPG734_24540) 30609..30785 - 177 WP_031593076.1 KGG domain-containing protein -
OOS96_RS24205 (DAPPPG734_24545) 30987..31283 + 297 WP_031593075.1 hypothetical protein -
OOS96_RS24210 (DAPPPG734_24550) 31328..31615 - 288 WP_031593074.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OOS96_RS24215 (DAPPPG734_24555) 31615..31854 - 240 WP_031593072.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OOS96_RS24220 (DAPPPG734_24560) 32195..34168 + 1974 WP_031593070.1 methyl-accepting chemotaxis protein -
OOS96_RS24225 (DAPPPG734_24565) 34273..35289 + 1017 WP_031593069.1 NAD(P)-dependent alcohol dehydrogenase -
OOS96_RS24230 (DAPPPG734_24570) 35339..36007 - 669 WP_031593068.1 DUF2268 domain-containing putative Zn-dependent protease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - - 1..163706 163706


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(2-78)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11039.97 Da        Isoelectric Point: 10.2591

>T296237 WP_031593074.1 NZ_OW970318:c31615-31328 [Pantoea agglomerans]
MPWQLECDQRALKEWRKLGPTVREQLKKKLAECLESPRIEANKLSRMPDCYKIKLKSSGYRLAYQVIDDRVVVFVVAVGK
RERSEVCSAASRRLS

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8876.29 Da        Isoelectric Point: 9.8615

>AT296237 WP_031593072.1 NZ_OW970318:c31854-31615 [Pantoea agglomerans]
VGSISIRIDGDLKRRSFAALKKMGVTPSDALRLMLAYIADNERLSFKQTSFSDEDAALVDIVKERLRNPEPVRITLDKL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References