Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hipBA/HipA-HipB |
Location | 2116147..2117708 | Replicon | chromosome |
Accession | NZ_OW970315 | ||
Organism | Pantoea agglomerans strain DAPP-PG734 |
Toxin (Protein)
Gene name | hipA | Uniprot ID | - |
Locus tag | OOS96_RS09790 | Protein ID | WP_031592298.1 |
Coordinates | 2116395..2117708 (+) | Length | 438 a.a. |
Antitoxin (Protein)
Gene name | hipB | Uniprot ID | - |
Locus tag | OOS96_RS09785 | Protein ID | WP_022625644.1 |
Coordinates | 2116147..2116395 (+) | Length | 83 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OOS96_RS09765 (DAPPPG734_09930) | 2111394..2113619 | + | 2226 | WP_031592293.1 | iron ABC transporter permease | - |
OOS96_RS09770 (DAPPPG734_09935) | 2113616..2114677 | + | 1062 | WP_031592294.1 | ABC transporter ATP-binding protein | - |
OOS96_RS09775 (DAPPPG734_09940) | 2114701..2115495 | + | 795 | WP_031592295.1 | inositol monophosphatase family protein | - |
OOS96_RS09780 (DAPPPG734_09945) | 2115529..2115966 | - | 438 | WP_031592296.1 | GNAT family N-acetyltransferase | - |
OOS96_RS09785 (DAPPPG734_09950) | 2116147..2116395 | + | 249 | WP_022625644.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin |
OOS96_RS09790 (DAPPPG734_09955) | 2116395..2117708 | + | 1314 | WP_031592298.1 | type II toxin-antitoxin system HipA family toxin | Toxin |
OOS96_RS09795 (DAPPPG734_09960) | 2117846..2118019 | + | 174 | WP_230873490.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
OOS96_RS09800 (DAPPPG734_09965) | 2118346..2119770 | + | 1425 | WP_031592299.1 | M24 family metallopeptidase | - |
OOS96_RS09805 (DAPPPG734_09970) | 2119846..2121891 | + | 2046 | WP_031592300.1 | FUSC family protein | - |
OOS96_RS09810 (DAPPPG734_09975) | 2122282..2122617 | - | 336 | WP_031592301.1 | gamma-glutamylcyclotransferase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 438 a.a. Molecular weight: 49103.72 Da Isoelectric Point: 8.8383
>T296232 WP_031592298.1 NZ_OW970315:2116395-2117708 [Pantoea agglomerans]
MQRLIAWMNGERVGVLTRQRNGAHEFQYDTAWLSNPLSRPLSLSMPLQVKAITSHAVINFFDNLLPDSPLIRDRIVARYQ
IKSRQPFDLLQEVGRDSVGATMLLPPDMPLPALQARYEVLDETRLESVLSAYQSDIPLGMLREETDFRISVAGAQEKTAL
LLTDEGWSIPAGATPTSHIIKLPIGEIKQPAATLDMRESVENEYLCLALARALGIDVPQATIIRAGQMRALAVERFDRRW
SRDKTRLIRLPQEDFCQALGLPSSTKYESDGGPGIAEIMQILMGSSNAIEDRYRFMMFQVFQWLIGATDGHAKNFSLFIE
RGGSYRLTPFYDVISAYPVLGGTGLNKRALKLAMGLRATKGKKTEIDKIFPRHFIATAKSVSFDRDSLQQIFDFFIKAFP
QAVVSVRDALPPGFPQHIADAIFSHSLIMLERLRHKE
MQRLIAWMNGERVGVLTRQRNGAHEFQYDTAWLSNPLSRPLSLSMPLQVKAITSHAVINFFDNLLPDSPLIRDRIVARYQ
IKSRQPFDLLQEVGRDSVGATMLLPPDMPLPALQARYEVLDETRLESVLSAYQSDIPLGMLREETDFRISVAGAQEKTAL
LLTDEGWSIPAGATPTSHIIKLPIGEIKQPAATLDMRESVENEYLCLALARALGIDVPQATIIRAGQMRALAVERFDRRW
SRDKTRLIRLPQEDFCQALGLPSSTKYESDGGPGIAEIMQILMGSSNAIEDRYRFMMFQVFQWLIGATDGHAKNFSLFIE
RGGSYRLTPFYDVISAYPVLGGTGLNKRALKLAMGLRATKGKKTEIDKIFPRHFIATAKSVSFDRDSLQQIFDFFIKAFP
QAVVSVRDALPPGFPQHIADAIFSHSLIMLERLRHKE
Download Length: 1314 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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