Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1948321..1948465 | Replicon | chromosome |
| Accession | NZ_OW969912 | ||
| Organism | Klebsiella variicola isolate 0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1948357..1948459 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1948321..1948465 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ196_RS09380 (AN2340V1_1793) | 1943451..1945511 | + | 2061 | WP_230138528.1 | oligopeptidase B | - |
| LQ196_RS09385 (AN2340V1_1794) | 1945515..1946174 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| LQ196_RS09390 (AN2340V1_1795) | 1946253..1946483 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| LQ196_RS09395 (AN2340V1_1796) | 1946597..1946971 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| LQ196_RS09400 (AN2340V1_1797) | 1946975..1947844 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| LQ196_RS09405 (AN2340V1_1798) | 1947861..1948199 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1948321..1948465 | - | 145 | - | - | Antitoxin |
| - | 1948357..1948459 | + | 103 | - | - | Toxin |
| LQ196_RS09410 (AN2340V1_1799) | 1948844..1948987 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| LQ196_RS09415 (AN2340V1_1800) | 1949091..1950059 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| LQ196_RS09420 (AN2340V1_1801) | 1950216..1950869 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| LQ196_RS09425 (AN2340V1_1802) | 1950866..1951057 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LQ196_RS09430 (AN2340V1_1803) | 1951155..1951394 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LQ196_RS09435 (AN2340V1_1804) | 1951510..1952943 | - | 1434 | WP_230138529.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T296219 NZ_OW969912:1948357-1948459 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT296219 NZ_OW969912:c1948465-1948321 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
