Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2090835..2090980 | Replicon | chromosome |
| Accession | NZ_OW969781 | ||
| Organism | Klebsiella oxytoca isolate 328 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2090870..2090973 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2090835..2090980 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ195_RS09790 (AN2363V1_1901) | 2085939..2087999 | + | 2061 | WP_115239440.1 | oligopeptidase B | - |
| LQ195_RS09795 (AN2363V1_1902) | 2088006..2088665 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ195_RS09800 (AN2363V1_1903) | 2088744..2088974 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ195_RS09805 (AN2363V1_1904) | 2089110..2089484 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| LQ195_RS09810 (AN2363V1_1905) | 2089489..2090358 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| LQ195_RS09815 (AN2363V1_1906) | 2090375..2090713 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2090835..2090980 | - | 146 | - | - | Antitoxin |
| - | 2090870..2090973 | + | 104 | - | - | Toxin |
| LQ195_RS09820 (AN2363V1_1907) | 2091100..2092059 | - | 960 | WP_230133600.1 | spore coat U domain-containing protein | - |
| LQ195_RS09825 (AN2363V1_1908) | 2092071..2094404 | - | 2334 | WP_115239442.1 | fimbria/pilus outer membrane usher protein | - |
| LQ195_RS09830 (AN2363V1_1909) | 2094407..2095114 | - | 708 | WP_224251817.1 | fimbria/pilus periplasmic chaperone | - |
| LQ195_RS09835 (AN2363V1_1910) | 2095189..2095707 | - | 519 | WP_070557030.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296186 NZ_OW969781:2090870-2090973 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT296186 NZ_OW969781:c2090980-2090835 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
