Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980912..1981057 | Replicon | chromosome |
| Accession | NZ_OW969711 | ||
| Organism | Citrobacter koseri isolate 0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980947..1981050 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980912..1981057 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQV24_RS09565 | 1977368..1978030 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| LQV24_RS09570 | 1978054..1978710 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| LQV24_RS09575 | 1978816..1979046 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| LQV24_RS09580 | 1979187..1979561 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| LQV24_RS09585 | 1979561..1980436 | + | 876 | WP_230012596.1 | copper homeostasis membrane protein CopD | - |
| LQV24_RS09590 | 1980453..1980791 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 1980912..1981057 | - | 146 | - | - | Antitoxin |
| - | 1980947..1981050 | + | 104 | - | - | Toxin |
| LQV24_RS09595 | 1981458..1981649 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| LQV24_RS09600 | 1982019..1984106 | - | 2088 | WP_199975974.1 | TonB-dependent receptor | - |
| LQV24_RS09605 | 1984354..1985016 | + | 663 | WP_071258581.1 | protein-serine/threonine phosphatase | - |
| LQV24_RS09610 | 1985017..1985208 | - | 192 | WP_012132031.1 | YebW family protein | - |
| LQV24_RS09615 | 1985311..1985547 | - | 237 | WP_024130262.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296172 NZ_OW969711:1980947-1981050 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT296172 NZ_OW969711:c1981057-1980912 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
