Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1967181..1967326 | Replicon | chromosome |
| Accession | NZ_OW969691 | ||
| Organism | Citrobacter koseri isolate 0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1967216..1967319 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1967181..1967326 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQV22_RS09435 | 1963637..1964299 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| LQV22_RS09440 | 1964323..1964979 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| LQV22_RS09445 | 1965085..1965315 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| LQV22_RS09450 | 1965456..1965830 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| LQV22_RS09455 | 1965830..1966705 | + | 876 | WP_214143410.1 | copper homeostasis membrane protein CopD | - |
| LQV22_RS09460 | 1966722..1967060 | + | 339 | WP_214143254.1 | YebY family protein | - |
| - | 1967181..1967326 | - | 146 | - | - | Antitoxin |
| - | 1967216..1967319 | + | 104 | - | - | Toxin |
| LQV22_RS09465 | 1967727..1967918 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| LQV22_RS09470 | 1968288..1970375 | - | 2088 | WP_115609226.1 | TonB-dependent receptor | - |
| LQV22_RS09475 | 1970623..1971285 | + | 663 | WP_214143253.1 | protein-serine/threonine phosphatase | - |
| LQV22_RS09480 | 1971286..1971477 | - | 192 | WP_012132031.1 | YebW family protein | - |
| LQV22_RS09485 | 1971580..1971816 | - | 237 | WP_024130262.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296162 NZ_OW969691:1967216-1967319 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT296162 NZ_OW969691:c1967326-1967181 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
