Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1314862..1315390 Replicon chromosome
Accession NC_021661
Organism Psychrobacter sp. G

Toxin (Protein)


Gene name relE Uniprot ID T1EBG3
Locus tag PSYCG_RS05575 Protein ID WP_020443321.1
Coordinates 1314862..1315149 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID X0RAH8
Locus tag PSYCG_RS05580 Protein ID WP_020443322.1
Coordinates 1315139..1315390 (-) Length 84 a.a.

Genomic Context

PSYCG_RS05555PSYCG_RS05550PSYCG_RS05560PSYCG_RS05565PSYCG_RS05570PSYCG_RS05575PSYCG_RS05580PSYCG_RS13115PSYCG_RS05590PSYCG_RS05595
Location: 1311261..1312589 (1329 bp)
Type: Others
Protein ID: WP_020443318.1
Location: 1310183..1311001 (819 bp)
Type: Others
Protein ID: WP_020443317.1
Location: 1312714..1312980 (267 bp)
Type: Others
Protein ID: WP_011513453.1
Location: 1313178..1314311 (1134 bp)
Type: Others
Protein ID: WP_020443319.1
Location: 1314384..1314767 (384 bp)
Type: Others
Protein ID: WP_020443320.1
Location: 1314862..1315149 (288 bp)
Type: Toxin
Protein ID: WP_020443321.1
Location: 1315139..1315390 (252 bp)
Type: Antitoxin
Protein ID: WP_020443322.1
Location: 1315665..1316444 (780 bp)
Type: Others
Protein ID: WP_020443323.1
Location: 1316481..1316957 (477 bp)
Type: Others
Protein ID: WP_020443324.1
Location: 1316954..1318348 (1395 bp)
Type: Others
Protein ID: WP_020443325.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PSYCG_RS055501310183..1311001-819WP_020443317.1Nif3-like dinuclear metal center hexameric protein-
PSYCG_RS055551311261..1312589+1329WP_020443318.1trypsin-like peptidase domain-containing protein-
PSYCG_RS055601312714..1312980-267WP_011513453.12Fe-2S iron-sulfur cluster binding domain-containing protein-
PSYCG_RS055651313178..1314311-1134WP_020443319.1ribonucleotide-diphosphate reductase subunit beta-
PSYCG_RS055701314384..1314767-384WP_020443320.1hypothetical protein-
PSYCG_RS055751314862..1315149-288WP_020443321.1type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE familyToxin
PSYCG_RS055801315139..1315390-252WP_020443322.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
PSYCG_RS131151315665..1316444-780WP_020443323.1toll/interleukin-1 receptor domain-containing protein-
PSYCG_RS055901316481..1316957-477WP_020443324.1TIR domain-containing protein-
PSYCG_RS055951316954..1318348-1395WP_020443325.1SIR2 family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-72)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11041.89 Da        Isoelectric Point: 10.5715

>T29616 WP_020443321.1 NC_021661:c1315149-1314862 [Psychrobacter sp. G]
MTYSLEFHPLALKEWKKIAPSIQQQFKKKLQQRLSNPHVPASKLTGHTDTYKIKLRTVGYRLVYTVKDDVVVVYVLAVGK
RENNKVYDNLATRQP

Download         Length: 288 bp

>T29616 NC_021661:c1315149-1314862 [Psychrobacter sp. G]
ATGACTTATAGCCTTGAGTTTCACCCGTTAGCGTTAAAAGAATGGAAAAAGATAGCGCCAAGTATCCAGCAGCAGTTTAA
GAAAAAATTACAGCAGCGATTGTCAAACCCTCATGTGCCTGCGTCAAAACTCACAGGACATACCGATACTTATAAAATCA
AATTACGCACCGTAGGGTATCGTCTGGTATATACCGTAAAAGACGACGTGGTGGTGGTTTATGTATTGGCAGTTGGCAAA
AGAGAAAACAACAAAGTGTATGACAATCTAGCGACGCGTCAGCCATGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9050.36 Da        Isoelectric Point: 4.2493

>AT29616 WP_020443322.1 NC_021661:c1315390-1315139 [Psychrobacter sp. G]
MQPIFATQTASISELKANPSALIKQSDGESIAILNHNKPVAYLVSTDVFERMMEAMDDMALSQTVSARLNDGQIPIKVTL
DDL

Download         Length: 252 bp

>AT29616 NC_021661:c1315390-1315139 [Psychrobacter sp. G]
ATGCAACCAATATTTGCCACACAGACAGCCAGTATCTCAGAATTAAAGGCCAACCCATCGGCACTGATTAAACAGTCAGA
TGGTGAGTCCATTGCTATCTTAAACCACAACAAACCCGTGGCTTACTTAGTCTCAACAGACGTCTTTGAGCGCATGATGG
AAGCGATGGACGATATGGCACTCAGCCAAACCGTTAGCGCACGATTAAATGATGGGCAGATACCGATAAAGGTAACGTTG
GATGACTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBT1EBG3

Antitoxin

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Source
ID
Structure
AlphaFold DBX0RAH8

References