296159

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type III Classification (family/domain) tenpIN/-
Location 100937..101526 Replicon chromosome
Accession NZ_OW969691
Organism Citrobacter koseri isolate 0

Toxin (Protein)


Gene name tenpN Uniprot ID -
Locus tag LQV22_RS00455 Protein ID WP_230031924.1
Coordinates 101080..101526 (+) Length 149 a.a.

Antitoxin (RNA)


Gene name tenpI
Locus tag -
Coordinates 100937..100983 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQV22_RS00440 (96338) 96338..98026 - 1689 WP_046623974.1 AAA family ATPase -
LQV22_RS00445 (98049) 98049..98921 - 873 WP_230031922.1 DNA adenine methylase -
LQV22_RS00450 (99010) 99010..100482 - 1473 WP_230031923.1 hypothetical protein -
- (100937) 100937..100983 + 47 NuclAT_0 - Antitoxin
- (100937) 100937..100983 + 47 NuclAT_0 - Antitoxin
- (100937) 100937..100983 + 47 NuclAT_0 - Antitoxin
- (100937) 100937..100983 + 47 NuclAT_0 - Antitoxin
LQV22_RS00455 (101080) 101080..101526 + 447 WP_230031924.1 hypothetical protein Toxin
LQV22_RS00460 (101598) 101598..102809 - 1212 WP_230031925.1 site-specific integrase -
LQV22_RS00465 (103013) 103013..103876 - 864 WP_200024275.1 YicC/YloC family endoribonuclease -
LQV22_RS00470 (104002) 104002..104718 + 717 WP_012135779.1 ribonuclease PH -
LQV22_RS00475 (104783) 104783..105424 + 642 WP_024131063.1 orotate phosphoribosyltransferase -
LQV22_RS00480 (105500) 105500..106096 - 597 WP_012135776.1 nucleoid occlusion factor SlmA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - rfaD 80356..130351 49995


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 149 a.a.        Molecular weight: 17245.12 Da        Isoelectric Point: 9.6065

>T296159 WP_230031924.1 NZ_OW969691:101080-101526 [Citrobacter koseri]
MENIVMILRQIKQDVYKRLCDNRPQVLEKNRGYGVISISLNGLTFAVPLRSNLNHPNGFKTIFLKDKKIWSGLDYSKALI
VKPEDLEPEAFKLKIEKEYEKLKANKSKIEKEFEAYVQGYILFVKSGCGEEKAYKFTTLQYFHDFLGL

Download         Length: 447 bp

Antitoxin


Download         Length: 47 bp

>AT296159 NZ_OW969691:100937-100983 [Citrobacter koseri]
GATTATGTGGCGGTAGAGGCATCCCCACGTTAAATAGAACAACCTCA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References