Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2146840..2146985 | Replicon | chromosome |
| Accession | NZ_OW969659 | ||
| Organism | Klebsiella oxytoca isolate 36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2146875..2146978 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2146840..2146985 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ206_RS10140 (AI2918V1_1966) | 2141944..2144004 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| LQ206_RS10145 (AI2918V1_1967) | 2144011..2144670 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ206_RS10150 (AI2918V1_1968) | 2144749..2144979 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ206_RS10155 (AI2918V1_1969) | 2145115..2145489 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| LQ206_RS10160 (AI2918V1_1970) | 2145494..2146363 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| LQ206_RS10165 (AI2918V1_1971) | 2146380..2146718 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2146840..2146985 | - | 146 | - | - | Antitoxin |
| - | 2146875..2146978 | + | 104 | - | - | Toxin |
| LQ206_RS10170 (AI2918V1_1972) | 2147104..2148063 | - | 960 | WP_016808305.1 | spore coat protein U domain-containing protein | - |
| LQ206_RS10175 (AI2918V1_1973) | 2148075..2150408 | - | 2334 | WP_230133246.1 | fimbria/pilus outer membrane usher protein | - |
| LQ206_RS10180 (AI2918V1_1974) | 2150411..2151118 | - | 708 | WP_224251817.1 | fimbria/pilus periplasmic chaperone | - |
| LQ206_RS10185 (AI2918V1_1975) | 2151193..2151711 | - | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296150 NZ_OW969659:2146875-2146978 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT296150 NZ_OW969659:c2146985-2146840 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
