Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1833339..1833486 | Replicon | chromosome |
| Accession | NZ_OW968431 | ||
| Organism | Klebsiella quasipneumoniae isolate 0 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1833380..1833482 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1833339..1833486 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ152_RS08760 | 1828474..1830534 | + | 2061 | WP_064187740.1 | oligopeptidase B | - |
| LQ152_RS08765 | 1830538..1831197 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| LQ152_RS08770 | 1831276..1831506 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LQ152_RS08775 | 1831619..1831993 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| LQ152_RS08780 | 1831997..1832866 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| LQ152_RS08785 | 1832883..1833221 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1833339..1833486 | - | 148 | - | - | Antitoxin |
| - | 1833380..1833482 | + | 103 | - | - | Toxin |
| LQ152_RS08790 | 1833870..1834013 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| LQ152_RS08795 | 1834117..1835085 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| LQ152_RS08800 | 1835242..1835895 | + | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| LQ152_RS08805 | 1835892..1836083 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LQ152_RS08810 | 1836181..1836420 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LQ152_RS08815 | 1836537..1837970 | - | 1434 | WP_230128086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T296131 NZ_OW968431:1833380-1833482 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT296131 NZ_OW968431:c1833486-1833339 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
