Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2713714..2713915 | Replicon | chromosome |
| Accession | NZ_OW968417 | ||
| Organism | Enterobacter cloacae isolate 764 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2713719..2713822 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2713714..2713915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ125_RS13065 (AI3013V2_2539) | 2709976..2711424 | + | 1449 | WP_199802692.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ125_RS13070 (AI3013V2_2540) | 2711529..2711768 | + | 240 | WP_006811010.1 | YebV family protein | - |
| LQ125_RS13075 (AI3013V2_2541) | 2711803..2712447 | - | 645 | WP_155019698.1 | protein-serine/threonine phosphatase | - |
| LQ125_RS13080 (AI3013V2_2542) | 2712615..2713595 | + | 981 | WP_163346739.1 | VirK/YbjX family protein | - |
| LQ125_RS13085 | 2713641..2713838 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2713714..2713915 | + | 202 | - | - | Antitoxin |
| - | 2713719..2713822 | - | 104 | - | - | Toxin |
| LQ125_RS13090 (AI3013V2_2543) | 2713964..2714302 | - | 339 | WP_022648464.1 | YebY family protein | - |
| LQ125_RS13095 (AI3013V2_2544) | 2714319..2715188 | - | 870 | WP_163346737.1 | copper homeostasis membrane protein CopD | - |
| LQ125_RS13100 (AI3013V2_2545) | 2715190..2715561 | - | 372 | WP_163346777.1 | CopC domain-containing protein YobA | - |
| LQ125_RS13105 (AI3013V2_2546) | 2715699..2715929 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LQ125_RS13110 (AI3013V2_2547) | 2716041..2716679 | + | 639 | WP_163346735.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LQ125_RS13115 (AI3013V2_2548) | 2716704..2717366 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296118 NZ_OW968417:c2713822-2713719 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT296118 NZ_OW968417:2713714-2713915 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
