Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2191756..2191901 | Replicon | chromosome |
| Accession | NZ_OW968347 | ||
| Organism | Klebsiella oxytoca isolate 101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2191791..2191894 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2191756..2191901 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ183_RS10420 (AI2945V1_2029) | 2186857..2188917 | + | 2061 | WP_064356175.1 | oligopeptidase B | - |
| LQ183_RS10425 (AI2945V1_2030) | 2188927..2189586 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ183_RS10430 (AI2945V1_2031) | 2189665..2189895 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ183_RS10435 (AI2945V1_2032) | 2190031..2190405 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| LQ183_RS10440 (AI2945V1_2033) | 2190410..2191279 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| LQ183_RS10445 (AI2945V1_2034) | 2191296..2191634 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2191756..2191901 | - | 146 | - | - | Antitoxin |
| - | 2191791..2191894 | + | 104 | - | - | Toxin |
| LQ183_RS10450 (AI2945V1_2035) | 2192021..2192980 | - | 960 | WP_126489277.1 | spore coat protein U domain-containing protein | - |
| LQ183_RS10455 (AI2945V1_2036) | 2192992..2195289 | - | 2298 | WP_224250538.1 | fimbria/pilus outer membrane usher protein | - |
| LQ183_RS10460 (AI2945V1_2037) | 2195328..2196035 | - | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| LQ183_RS10465 (AI2945V1_2038) | 2196110..2196628 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296108 NZ_OW968347:2191791-2191894 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT296108 NZ_OW968347:c2191901-2191756 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
