Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2915366..2915517 | Replicon | chromosome |
| Accession | NZ_OW968328 | ||
| Organism | Enterobacter cloacae isolate 1382 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2915379..2915482 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2915366..2915517 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ108_RS13840 (AI2999V1_2699) | 2911642..2913084 | + | 1443 | WP_230136139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ108_RS13845 (AI2999V1_2700) | 2913190..2913429 | + | 240 | WP_013096113.1 | YebV family protein | - |
| LQ108_RS13850 (AI2999V1_2701) | 2913463..2914107 | - | 645 | WP_230136141.1 | protein-serine/threonine phosphatase | - |
| LQ108_RS13855 (AI2999V1_2702) | 2914274..2915215 | + | 942 | WP_230136143.1 | VirK/YbjX family protein | - |
| - | 2915366..2915517 | + | 152 | - | - | Antitoxin |
| - | 2915379..2915482 | - | 104 | - | - | Toxin |
| LQ108_RS13860 (AI2999V1_2703) | 2915622..2915960 | - | 339 | WP_013096105.1 | YebY family protein | - |
| LQ108_RS13865 (AI2999V1_2704) | 2915977..2916846 | - | 870 | WP_230136145.1 | copper homeostasis membrane protein CopD | - |
| LQ108_RS13870 (AI2999V1_2705) | 2916848..2917219 | - | 372 | WP_029882307.1 | CopC domain-containing protein YobA | - |
| LQ108_RS13875 (AI2999V1_2706) | 2917357..2917587 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LQ108_RS13880 (AI2999V1_2707) | 2917697..2918347 | + | 651 | WP_161670190.1 | carbon-nitrogen hydrolase family protein | - |
| LQ108_RS13885 (AI2999V1_2708) | 2918371..2919033 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296094 NZ_OW968328:c2915482-2915379 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT296094 NZ_OW968328:2915366-2915517 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
