Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 4390266..4390763 Replicon chromosome
Accession NZ_OW968288
Organism Escherichia coli isolate 10

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag LQ134_RS21390 Protein ID WP_001173343.1
Coordinates 4390266..4390439 (-) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag LQ134_RS21395 Protein ID WP_000398619.1
Coordinates 4390467..4390763 (-) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ134_RS21380 (4386936) 4386936..4388393 + 1458 WP_000856829.1 dipeptide/tripeptide permease DtpC -
LQ134_RS21385 (4388630) 4388630..4390147 + 1518 WP_001295074.1 lysine--tRNA ligase -
LQ134_RS21390 (4390266) 4390266..4390439 - 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
LQ134_RS21395 (4390467) 4390467..4390763 - 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
LQ134_RS21400 (4390990) 4390990..4391262 - 273 WP_000405651.1 GNAT family N-acetyltransferase -
LQ134_RS21405 (4391274) 4391274..4391504 - 231 WP_000371704.1 4Fe-4S mono-cluster protein YjdI -
LQ134_RS21410 (4391685) 4391685..4393316 + 1632 WP_001216477.1 sensor histidine kinase -
LQ134_RS21415 (4393313) 4393313..4394032 + 720 WP_000611288.1 two-component system response regulator DcuR -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T296076 WP_001173343.1 NZ_OW968288:c4390439-4390266 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT296076 WP_000398619.1 NZ_OW968288:c4390763-4390467 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References