Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006035..2006306 | Replicon | chromosome |
| Accession | NZ_OW968288 | ||
| Organism | Escherichia coli isolate 10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006165..2006268 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006035..2006306 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ134_RS09540 | 2002590..2003252 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LQ134_RS09545 | 2003276..2003932 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ134_RS09550 | 2004034..2004264 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ134_RS09555 | 2004403..2004777 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LQ134_RS09560 | 2004781..2005653 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| LQ134_RS09565 | 2005666..2006007 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2006035..2006306 | - | 272 | - | - | Antitoxin |
| - | 2006165..2006268 | + | 104 | - | - | Toxin |
| LQ134_RS09570 | 2006403..2007059 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LQ134_RS09575 | 2007060..2007251 | - | 192 | WP_000457842.1 | YebW family protein | - |
| LQ134_RS09580 | 2007356..2007592 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ134_RS09585 | 2007710..2009149 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296064 NZ_OW968288:2006165-2006268 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT296064 NZ_OW968288:c2006306-2006035 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
