Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2191754..2191899 | Replicon | chromosome |
| Accession | NZ_OW968280 | ||
| Organism | Klebsiella oxytoca isolate 101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2191789..2191892 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2191754..2191899 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ191_RS10420 (AI2946V1_2028) | 2186855..2188915 | + | 2061 | WP_064356175.1 | oligopeptidase B | - |
| LQ191_RS10425 (AI2946V1_2029) | 2188925..2189584 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ191_RS10430 (AI2946V1_2030) | 2189663..2189893 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ191_RS10435 (AI2946V1_2031) | 2190029..2190403 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| LQ191_RS10440 (AI2946V1_2032) | 2190408..2191277 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| LQ191_RS10445 (AI2946V1_2033) | 2191294..2191632 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2191754..2191899 | - | 146 | - | - | Antitoxin |
| - | 2191789..2191892 | + | 104 | - | - | Toxin |
| LQ191_RS10450 (AI2946V1_2034) | 2192019..2192978 | - | 960 | WP_126489277.1 | spore coat protein U domain-containing protein | - |
| LQ191_RS10455 (AI2946V1_2035) | 2192990..2195323 | - | 2334 | WP_126489276.1 | fimbria/pilus outer membrane usher protein | - |
| LQ191_RS10460 (AI2946V1_2036) | 2195326..2196033 | - | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| LQ191_RS10465 (AI2946V1_2037) | 2196108..2196626 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T296051 NZ_OW968280:2191789-2191892 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT296051 NZ_OW968280:c2191899-2191754 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
