Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046332..2046480 | Replicon | chromosome |
| Accession | NC_021659 | ||
| Organism | Serratia plymuthica S13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046376..2046472 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046332..2046480 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M621_RS34745 | 2041548..2041973 | + | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
| M621_RS34750 | 2042142..2043095 | + | 954 | WP_006324738.1 | prolyl aminopeptidase | - |
| M621_RS34755 | 2043126..2043356 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| M621_RS34760 | 2043731..2044249 | + | 519 | WP_004943119.1 | non-heme ferritin | - |
| M621_RS34765 | 2044555..2044938 | + | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| M621_RS34770 | 2044942..2045823 | + | 882 | WP_006324741.1 | copper homeostasis membrane protein CopD | - |
| M621_RS34775 | 2045893..2046234 | + | 342 | WP_004943126.1 | YebY family protein | - |
| - | 2046332..2046480 | - | 149 | - | - | Antitoxin |
| - | 2046376..2046472 | + | 97 | - | - | Toxin |
| M621_RS34785 | 2046873..2047622 | + | 750 | WP_037430657.1 | response regulator transcription factor | - |
| M621_RS34790 | 2047619..2048983 | + | 1365 | WP_020438854.1 | HAMP domain-containing protein | - |
| M621_RS34795 | 2048980..2050932 | - | 1953 | WP_006324744.1 | TonB-dependent receptor | - |
| M621_RS50745 | 2051148..2051261 | + | 114 | Protein_1895 | IS1 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T29605 NC_021659:2046376-2046472 [Serratia plymuthica S13]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT29605 NC_021659:c2046480-2046332 [Serratia plymuthica S13]
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
