Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2008310..2008581 Replicon chromosome
Accession NZ_OW967975
Organism Escherichia coli isolate 10

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2008440..2008543 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2008310..2008581 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ150_RS09570 2004865..2005527 - 663 WP_000944256.1 exodeoxyribonuclease X -
LQ150_RS09575 2005551..2006207 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
LQ150_RS09580 2006309..2006539 - 231 WP_000916763.1 DNA polymerase III subunit theta -
LQ150_RS09585 2006678..2007052 + 375 WP_000168747.1 CopC domain-containing protein YobA -
LQ150_RS09590 2007056..2007928 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
LQ150_RS09595 2007941..2008282 + 342 WP_000976476.1 YebY family protein -
- 2008310..2008581 - 272 - - Antitoxin
- 2008440..2008543 + 104 - - Toxin
LQ150_RS09600 2008678..2009334 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
LQ150_RS09605 2009335..2009526 - 192 WP_000457842.1 YebW family protein -
LQ150_RS09610 2009631..2009867 - 237 WP_001295499.1 YebV family protein -
LQ150_RS09615 2009985..2011424 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T295907 NZ_OW967975:2008440-2008543 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT295907 NZ_OW967975:c2008581-2008310 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References