Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940226..1940368 | Replicon | chromosome |
| Accession | NC_021591 | ||
| Organism | Serratia plymuthica 4Rx13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940270..1940366 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940226..1940368 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SOD_RS08985 | 1935444..1935869 | + | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
| SOD_RS08990 | 1936038..1936991 | + | 954 | WP_004943115.1 | prolyl aminopeptidase | - |
| SOD_RS08995 | 1937021..1937251 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| SOD_RS09000 | 1937626..1938144 | + | 519 | WP_004943119.1 | non-heme ferritin | - |
| SOD_RS09005 | 1938449..1938832 | + | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| SOD_RS09010 | 1938836..1939717 | + | 882 | WP_004943125.1 | copper homeostasis membrane protein CopD | - |
| SOD_RS09015 | 1939787..1940128 | + | 342 | WP_004943126.1 | YebY family protein | - |
| - | 1940226..1940368 | - | 143 | - | - | Antitoxin |
| - | 1940270..1940366 | + | 97 | - | - | Toxin |
| SOD_RS09020 | 1940453..1941184 | - | 732 | WP_080653238.1 | tyrosine-type recombinase/integrase | - |
| SOD_RS09025 | 1941234..1942304 | - | 1071 | WP_020453785.1 | acyltransferase | - |
| SOD_RS09030 | 1942423..1943253 | + | 831 | WP_147150489.1 | hypothetical protein | - |
| SOD_RS09040 | 1943648..1944709 | - | 1062 | WP_020453787.1 | acyltransferase | - |
| SOD_RS25710 | 1945075..1945218 | + | 144 | WP_155243331.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T29589 NC_021591:1940270-1940366 [Serratia plymuthica 4Rx13]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT29589 NC_021591:c1940368-1940226 [Serratia plymuthica 4Rx13]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
