Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2244709..2244980 | Replicon | chromosome |
| Accession | NZ_OW967966 | ||
| Organism | Escherichia coli isolate 648 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2244839..2244942 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2244709..2244980 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ127_RS10920 | 2241264..2241926 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LQ127_RS10925 | 2241950..2242606 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ127_RS10930 | 2242708..2242938 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ127_RS10935 | 2243077..2243451 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| LQ127_RS10940 | 2243455..2244327 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| LQ127_RS10945 | 2244340..2244681 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2244709..2244980 | - | 272 | - | - | Antitoxin |
| - | 2244839..2244942 | + | 104 | - | - | Toxin |
| LQ127_RS10950 | 2245077..2245733 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| LQ127_RS10955 | 2245734..2245925 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LQ127_RS10960 | 2246030..2246266 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ127_RS10965 | 2246384..2247823 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295884 NZ_OW967966:2244839-2244942 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT295884 NZ_OW967966:c2244980-2244709 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
