Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2787533..2787732 | Replicon | chromosome |
| Accession | NZ_OW967388 | ||
| Organism | Enterobacter cloacae isolate 114 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2787536..2787639 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2787533..2787732 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ218_RS13435 (AI2624V1_2617) | 2783797..2785239 | + | 1443 | WP_072199618.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ218_RS13440 (AI2624V1_2618) | 2785346..2785585 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LQ218_RS13445 (AI2624V1_2619) | 2785620..2786264 | - | 645 | WP_003859884.1 | protein-serine/threonine phosphatase | - |
| LQ218_RS13450 (AI2624V1_2620) | 2786432..2787412 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| LQ218_RS13455 | 2787458..2787655 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2787533..2787732 | + | 200 | - | - | Antitoxin |
| - | 2787536..2787639 | - | 104 | - | - | Toxin |
| LQ218_RS13460 (AI2624V1_2621) | 2787781..2788119 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LQ218_RS13465 (AI2624V1_2622) | 2788136..2789005 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| LQ218_RS13470 (AI2624V1_2623) | 2789007..2789378 | - | 372 | WP_022651439.1 | CopC domain-containing protein YobA | - |
| LQ218_RS13475 (AI2624V1_2624) | 2789516..2789746 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LQ218_RS13480 (AI2624V1_2625) | 2789858..2790508 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LQ218_RS13485 (AI2624V1_2626) | 2790533..2791195 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295806 NZ_OW967388:c2787639-2787536 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT295806 NZ_OW967388:2787533-2787732 [Enterobacter cloacae]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
