Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220850..2220995 | Replicon | chromosome |
| Accession | NZ_OW967374 | ||
| Organism | Klebsiella oxytoca isolate 145 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2220885..2220988 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220850..2220995 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ212_RS10610 (AI2623V1_2056) | 2215954..2218014 | + | 2061 | WP_064344540.1 | oligopeptidase B | - |
| LQ212_RS10615 (AI2623V1_2057) | 2218021..2218680 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ212_RS10620 (AI2623V1_2058) | 2218759..2218989 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ212_RS10625 (AI2623V1_2059) | 2219125..2219499 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| LQ212_RS10630 (AI2623V1_2060) | 2219504..2220373 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| LQ212_RS10635 (AI2623V1_2061) | 2220390..2220728 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2220850..2220995 | - | 146 | - | - | Antitoxin |
| - | 2220885..2220988 | + | 104 | - | - | Toxin |
| LQ212_RS10640 (AI2623V1_2062) | 2221102..2222061 | - | 960 | WP_064344539.1 | spore coat protein U domain-containing protein | - |
| LQ212_RS10645 (AI2623V1_2063) | 2222073..2224406 | - | 2334 | WP_064344538.1 | fimbria/pilus outer membrane usher protein | - |
| LQ212_RS10650 (AI2623V1_2064) | 2224409..2225116 | - | 708 | WP_228710215.1 | fimbria/pilus periplasmic chaperone | - |
| LQ212_RS10655 (AI2623V1_2065) | 2225191..2225709 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295792 NZ_OW967374:2220885-2220988 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT295792 NZ_OW967374:c2220995-2220850 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
