Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2151561..2151704 | Replicon | chromosome |
| Accession | NZ_OW967263 | ||
| Organism | Citrobacter freundii isolate 22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2151596..2151699 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2151561..2151704 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ176_RS10420 | 2148008..2148670 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| LQ176_RS10425 | 2148694..2149350 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| LQ176_RS10430 | 2149457..2149687 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LQ176_RS10435 | 2149831..2150205 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LQ176_RS10440 | 2150209..2151081 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| LQ176_RS10445 | 2151102..2151440 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2151561..2151704 | - | 144 | - | - | Antitoxin |
| - | 2151596..2151699 | + | 104 | - | - | Toxin |
| LQ176_RS10450 | 2151853..2152494 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| LQ176_RS10455 | 2152495..2152686 | - | 192 | WP_003034941.1 | YebW family protein | - |
| LQ176_RS10460 | 2152789..2153025 | - | 237 | WP_029139506.1 | YebV family protein | - |
| LQ176_RS10465 | 2153126..2154514 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2068187..2159921 | 91734 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295777 NZ_OW967263:2151596-2151699 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT295777 NZ_OW967263:c2151704-2151561 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
