Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2092607..2092878 | Replicon | chromosome |
| Accession | NZ_OW967178 | ||
| Organism | Escherichia coli isolate 362 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2092737..2092840 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2092607..2092878 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ124_RS09920 | 2089162..2089824 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LQ124_RS09925 | 2089848..2090504 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ124_RS09930 | 2090606..2090836 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ124_RS09935 | 2090975..2091349 | + | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| LQ124_RS09940 | 2091353..2092225 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| LQ124_RS09945 | 2092238..2092579 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 2092607..2092878 | - | 272 | - | - | Antitoxin |
| - | 2092737..2092840 | + | 104 | - | - | Toxin |
| LQ124_RS09950 | 2092975..2093631 | + | 657 | WP_001590231.1 | protein-serine/threonine phosphatase | - |
| LQ124_RS09955 | 2093632..2093823 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LQ124_RS09960 | 2093928..2094164 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ124_RS09965 | 2094282..2095721 | - | 1440 | WP_024196367.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2085297..2095727 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295759 NZ_OW967178:2092737-2092840 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT295759 NZ_OW967178:c2092878-2092607 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
