Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 320782..321053 | Replicon | chromosome |
| Accession | NZ_OW967003 | ||
| Organism | Escherichia coli isolate 624 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 320912..321015 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 320782..321053 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ179_RS01560 | 317337..317999 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LQ179_RS01565 | 318023..318679 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ179_RS01570 | 318781..319011 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ179_RS01575 | 319150..319524 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| LQ179_RS01580 | 319528..320400 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| LQ179_RS01585 | 320413..320754 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 320782..321053 | - | 272 | - | - | Antitoxin |
| - | 320912..321015 | + | 104 | - | - | Toxin |
| LQ179_RS01590 | 321150..321806 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| LQ179_RS01595 | 321807..321998 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LQ179_RS01600 | 322103..322339 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ179_RS01605 | 322457..323896 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295731 NZ_OW967003:320912-321015 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT295731 NZ_OW967003:c321053-320782 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
