Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2155886..2156029 | Replicon | chromosome |
| Accession | NZ_OW849527 | ||
| Organism | Citrobacter freundii isolate 22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2155921..2156024 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2155886..2156029 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ181_RS10525 | 2152333..2152995 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| LQ181_RS10530 | 2153019..2153675 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| LQ181_RS10535 | 2153782..2154012 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LQ181_RS10540 | 2154156..2154530 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LQ181_RS10545 | 2154534..2155406 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| LQ181_RS10550 | 2155427..2155765 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2155886..2156029 | - | 144 | - | - | Antitoxin |
| - | 2155921..2156024 | + | 104 | - | - | Toxin |
| LQ181_RS10555 | 2156178..2156819 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| LQ181_RS10560 | 2156820..2157011 | - | 192 | WP_003034941.1 | YebW family protein | - |
| LQ181_RS10565 | 2157114..2157350 | - | 237 | WP_029139506.1 | YebV family protein | - |
| LQ181_RS10570 | 2157451..2158839 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2089276..2158872 | 69596 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295718 NZ_OW849527:2155921-2156024 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT295718 NZ_OW849527:c2156029-2155886 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
