Detailed information of TA system TA029571

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): tsbAT/-
• Location: 1942589..1943365
• Replicon: chromosome
• Accession: NC_021554
• Organism: Staphylococcus aureus CA-347

Toxin (Protein)

• Gene name: tsbT
• Uniprot ID: -
• Locus tag: CA347_RS09540
• Protein ID: WP_000031109.1
• Coordinates: 1942589..1942741 (-)
• Length: 51 a.a.

Antitoxin (Protein)

• Gene name: tsbA
• Uniprot ID: W8U4V4
• Locus tag: CA347_RS09545
• Protein ID: WP_001251224.1
• Coordinates: 1942766..1943365 (-)
• Length: 200 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
CA347_RS09515	1938567..1939388	+	822	WP_000669377.1	RluA family pseudouridine synthase	-
CA347_RS09520	1939845..1941230	-	1386	WP_000116239.1	class II fumarate hydratase	-
CA347_RS09525	1941426..1941821	-	396	WP_000901019.1	hypothetical protein	-
CA347_RS09540	1942589..1942741	-	153	WP_000031109.1	hypothetical protein	Toxin
CA347_RS09545	1942766..1943365	-	600	WP_001251224.1	glucosamine-6-phosphate isomerase	Antitoxin
CA347_RS09550	1943524..1943994	-	471	WP_000181394.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
CA347_RS09555	1943999..1945126	-	1128	WP_000379990.1	tRNA epoxyqueuosine(34) reductase QueG	-
CA347_RS09560	1945277..1945999	-	723	WP_000590809.1	amino acid ABC transporter ATP-binding protein	-
CA347_RS09565	1945992..1947449	-	1458	WP_000649917.1	ABC transporter permease subunit	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Glucosamine-6-phosphate isomerase (124-196)

Sequences

Toxin

Protein

• Length: 51 a.a.
• Molecular weight: 5950.31 Da
• Isoelectric Point: 3.9075

>T29571 WP_000031109.1 NC_021554:c1942741-1942589 [Staphylococcus aureus CA-347]
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEESQ

Nucleotide

• Length: 153 bp

>T29571 NC_021554:c1942741-1942589 [Staphylococcus aureus CA-347]
ATGTCTAAAGACAAAGATCCAAAATTAAATTATCATGAAGAAGAAAACAGTATGGTAACTGATTTTGAAGATTTAAAAGA
ATTAGGTAAAGAAATGGAACAAATTTCTGATCAAAATGATCAAGAAAAGAATTCTGAAGAAGAGAGTCAGTAA

Antitoxin

Protein

• Length: 200 a.a.
• Molecular weight: 22343.47 Da
• Isoelectric Point: 5.1445

>AT29571 WP_001251224.1 NC_021554:c1943365-1942766 [Staphylococcus aureus CA-347]
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA

Nucleotide

• Length: 600 bp

>AT29571 NC_021554:c1943365-1942766 [Staphylococcus aureus CA-347]
ATGGCAATGAACTTTAAAGTCTTTGACAATAGTCAACTTGTAGCAGAATATGCTGCTGATATTATTAGAAAGCAATTTAA
CAATAATCCTACTACAATTGCAGGTTTTCATTTAGATACAGATCAAGCGCCAGTACTAGATGAATTAAAGAAAAATGTAG
AAAAACATGCTGTTGATTTTAGCCAAATAAATATTTTAGATTATGACGATAAAAAATCATATTTCGAAGCGTTAGGTGTA
CCAGCAGGTCAAGTTTATCCAATTGCTTATGAAAAAGATGCAATCGAATTAATCGCTGATAAGATTAAAACTAAAGAAAA
CAAAGGGAAATTAACATTACAAGTTGTTTCTATCGATGAGCAAGGTAAGTTAAATGTTAGTATTCGTCAAGGACTAATGG
AAGCAAGAGAAATTTTCTTAGTAGTGACTGGTGCTAATAAACGAGATGTAGTTGAAAAATTATATCAAGAAAATGGTAAA
ACAAGCTTCGAACCAGCCGATTTAAAAGCACATAGAATGGTAAATGTTATTCTTGATAAAGAAGCGGCTGCAGGTTTACC
TGAAGATGTTAAAGCTTACTTTACGTCACGCTTTGCTTAA

Structures

Antitoxin

• AlphaFold DB: W8U4V4