Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2195790..2195935 | Replicon | chromosome |
| Accession | NZ_OW849470 | ||
| Organism | Klebsiella oxytoca isolate 325 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2195825..2195928 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2195790..2195935 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ213_RS10390 (AI2699V1_2005) | 2190894..2192954 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| LQ213_RS10395 (AI2699V1_2006) | 2192961..2193620 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| LQ213_RS10400 (AI2699V1_2007) | 2193699..2193929 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LQ213_RS10405 (AI2699V1_2008) | 2194065..2194439 | + | 375 | WP_004103348.1 | CopC domain-containing protein YobA | - |
| LQ213_RS10410 (AI2699V1_2009) | 2194444..2195313 | + | 870 | WP_230185932.1 | copper homeostasis membrane protein CopD | - |
| LQ213_RS10415 (AI2699V1_2010) | 2195330..2195668 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2195790..2195935 | - | 146 | - | - | Antitoxin |
| - | 2195825..2195928 | + | 104 | - | - | Toxin |
| LQ213_RS10420 (AI2699V1_2011) | 2196055..2197014 | - | 960 | WP_004113762.1 | spore coat protein U domain-containing protein | - |
| LQ213_RS10425 (AI2699V1_2012) | 2197026..2199323 | - | 2298 | WP_227629778.1 | fimbria/pilus outer membrane usher protein | - |
| LQ213_RS10430 (AI2699V1_2013) | 2199362..2200069 | - | 708 | WP_227629779.1 | fimbria/pilus periplasmic chaperone | - |
| LQ213_RS10435 (AI2699V1_2014) | 2200144..2200662 | - | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295705 NZ_OW849470:2195825-2195928 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT295705 NZ_OW849470:c2195935-2195790 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
