Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2007554..2007825 | Replicon | chromosome |
| Accession | NZ_OW849377 | ||
| Organism | Escherichia coli isolate 162 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2007684..2007787 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2007554..2007825 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ158_RS09585 | 2004109..2004771 | - | 663 | WP_230133054.1 | exodeoxyribonuclease X | - |
| LQ158_RS09590 | 2004795..2005451 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ158_RS09595 | 2005553..2005783 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ158_RS09600 | 2005922..2006296 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| LQ158_RS09605 | 2006300..2007172 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LQ158_RS09610 | 2007185..2007526 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2007554..2007825 | - | 272 | - | - | Antitoxin |
| - | 2007684..2007787 | + | 104 | - | - | Toxin |
| LQ158_RS09615 | 2007922..2008578 | + | 657 | WP_024258105.1 | protein-serine/threonine phosphatase | - |
| LQ158_RS09620 | 2008579..2008770 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LQ158_RS09625 | 2008875..2009111 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LQ158_RS09630 | 2009229..2010668 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295682 NZ_OW849377:2007684-2007787 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT295682 NZ_OW849377:c2007825-2007554 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
