Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2916486..2916640 | Replicon | chromosome |
| Accession | NZ_OW849195 | ||
| Organism | Enterobacter cloacae isolate 125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2916502..2916605 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2916486..2916640 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ145_RS14270 (AI2762V1_2794) | 2912764..2914206 | + | 1443 | WP_032629037.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ145_RS14275 (AI2762V1_2795) | 2914312..2914551 | + | 240 | WP_008500472.1 | YebV family protein | - |
| LQ145_RS14280 (AI2762V1_2796) | 2914585..2915229 | - | 645 | WP_023330645.1 | protein-serine/threonine phosphatase | - |
| LQ145_RS14285 (AI2762V1_2797) | 2915397..2916338 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| - | 2916486..2916640 | + | 155 | - | - | Antitoxin |
| - | 2916502..2916605 | - | 104 | - | - | Toxin |
| LQ145_RS14290 (AI2762V1_2798) | 2916744..2917082 | - | 339 | WP_014884299.1 | YebY family protein | - |
| LQ145_RS14295 (AI2762V1_2799) | 2917099..2917968 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| LQ145_RS14300 (AI2762V1_2800) | 2917970..2918341 | - | 372 | WP_023330713.1 | CopC domain-containing protein YobA | - |
| LQ145_RS14305 (AI2762V1_2801) | 2918479..2918709 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| LQ145_RS14310 (AI2762V1_2802) | 2918820..2919470 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| LQ145_RS14315 (AI2762V1_2803) | 2919495..2920157 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295668 NZ_OW849195:c2916605-2916502 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT295668 NZ_OW849195:2916486-2916640 [Enterobacter cloacae]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
