Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2032414..2032555 | Replicon | chromosome |
| Accession | NZ_OW849099 | ||
| Organism | Citrobacter freundii isolate 402 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2032449..2032552 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2032414..2032555 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ100_RS09725 | 2028861..2029523 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| LQ100_RS09730 | 2029547..2030203 | - | 657 | WP_060855110.1 | carbon-nitrogen hydrolase family protein | - |
| LQ100_RS09735 | 2030310..2030540 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LQ100_RS09740 | 2030684..2031058 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LQ100_RS09745 | 2031062..2031934 | + | 873 | WP_060855111.1 | copper homeostasis membrane protein CopD | - |
| LQ100_RS09750 | 2031955..2032293 | + | 339 | WP_060855112.1 | YebY family protein | - |
| - | 2032414..2032555 | - | 142 | - | - | Antitoxin |
| - | 2032449..2032552 | + | 104 | - | - | Toxin |
| LQ100_RS09755 | 2032685..2033764 | - | 1080 | WP_016150458.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LQ100_RS09760 | 2033742..2034002 | - | 261 | WP_230142764.1 | excisionase | - |
| LQ100_RS09765 | 2034066..2036537 | - | 2472 | WP_060855113.1 | exonuclease | - |
| LQ100_RS09770 | 2036679..2037017 | - | 339 | WP_230141588.1 | Rrf2 family transcriptional regulator | - |
| LQ100_RS09775 | 2037067..2037279 | - | 213 | WP_153070801.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2026792..2080481 | 53689 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295654 NZ_OW849099:2032449-2032552 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT295654 NZ_OW849099:c2032555-2032414 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
