Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2173385..2173528 | Replicon | chromosome |
| Accession | NZ_OW849082 | ||
| Organism | Citrobacter freundii isolate 8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173420..2173523 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2173385..2173528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ154_RS10705 | 2169832..2170494 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| LQ154_RS10710 | 2170518..2171174 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| LQ154_RS10715 | 2171281..2171511 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| LQ154_RS10720 | 2171655..2172029 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| LQ154_RS10725 | 2172033..2172905 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| LQ154_RS10730 | 2172926..2173264 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2173385..2173528 | - | 144 | - | - | Antitoxin |
| - | 2173420..2173523 | + | 104 | - | - | Toxin |
| LQ154_RS10735 | 2173601..2174686 | - | 1086 | WP_065944794.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| LQ154_RS10740 | 2174655..2174927 | - | 273 | WP_119174329.1 | excisionase | - |
| LQ154_RS10745 | 2174992..2175234 | - | 243 | WP_119174328.1 | DUF4060 family protein | - |
| LQ154_RS10750 | 2175274..2176359 | - | 1086 | WP_119174327.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2167763..2225381 | 57618 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T295637 NZ_OW849082:2173420-2173523 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT295637 NZ_OW849082:c2173528-2173385 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
