Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1012790..1013058 | Replicon | chromosome |
| Accession | NZ_OW849064 | ||
| Organism | Escherichia coli isolate 131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1012828..1012930 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1012790..1013058 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ135_RS05315 | 1009948..1011387 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LQ135_RS05320 | 1011504..1011740 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LQ135_RS05325 | 1011845..1012036 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LQ135_RS05330 | 1012037..1012693 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1012790..1013058 | + | 269 | - | - | Antitoxin |
| - | 1012828..1012930 | - | 103 | - | - | Toxin |
| LQ135_RS05335 | 1013088..1013429 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LQ135_RS05340 | 1013442..1014314 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| LQ135_RS05345 | 1014318..1014692 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LQ135_RS05350 | 1014831..1015061 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LQ135_RS05355 | 1015163..1015819 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LQ135_RS05360 | 1015843..1016505 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T295602 NZ_OW849064:c1012930-1012828 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT295602 NZ_OW849064:1012790-1013058 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
